Literature

Authorssort descendingYearTitle
J. M. Allen, Boyd, B. M., Nguyen, N. -phuong, Vachaspati, P., Warnow, T., Huang, D. I., Grady, P. G. S., Bell, K. C., Cronk, Q. C., Mugisha, L., Pittendrigh, B. R., Leonardi, M. Soledad, Reed, D. L., Johnson, K. P.2017Phylogenomics from Whole Genome Sequences Using aTRAM
J. M. Allen, Huang, D. I., Cronk, Q. C., Johnson, K. P.2015aTRAM - automated target restricted assembly method: a fast method for assembling loci across divergent taxa from next-generation sequencing data
J. M. Allen, LaFrance, R., Folk, R. A., Johnson, K. P., Guralnick, R. P.2018aTRAM 2.0: An Improved, Flexible Locus Assembler for NGS Data
K. C. Bell, Allen, J. M., Johnson, K. P., Demboski, J. R., Cook, J. A.2020Disentangling lousy relationships: Comparative phylogenomics of two sucking louse lineages parasitizing chipmunks
B. M. Boyd, Allen, J. M., Koga, R., Fukatsu, T., Sweet, A. D., Johnson, K. P., Reed, D. L.2016Two Bacterial Genera, Sodalis and Rickettsia, Associated with the Seal Louse Proechinophthirus fluctus (Phthiraptera: Anoplura)
B. M. Boyd, Allen, J. M., Nguyen, N. -phuong, Sweet, A. D., Warnow, T., Shapiro, M. D., Villa, S. M., Bush, S. E., Clayton, D. H., Johnson, K. P.2017Phylogenomics using Target-restricted Assembly Resolves Intra-generic Relationships of Parasitic Lice (Phthiraptera: Columbicola)
B. M. Boyd, Allen, J. M., Nguyen, N. -phuong, Vachaspati, P., Quicksall, Z. S., Warnow, T., Mugisha, L., Johnson, K. P., Reed, D. L.2017Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice
B. M. Boyd, Nguyen, N. -phuong, Allen, J. M., Waterhouse, R. M., Vo, K. B., Sweet, A. D., Clayton, D. H., Bush, S. E., Shapiro, M. D., Johnson, K. P.2022Long-distance dispersal of pigeons and doves generated new ecological opportunities for host-switching and adaptive radiation by their parasites
S. E. Bush, Weckstein, J. D., Gustafsson, D. R., Allen, J. M., DiBlasi, E., Shreve, S. M., Boldt, R., Skeen, H. R., Johnson, K. P.2016Unlocking the black box of feather louse diversity: A molecular phylogeny of the hyper-diverse genus Brueelia
S. E. Bush, Weckstein, J. D., Gustafsson, D. R., Allen, J. M., DiBlasi, E., Shreve, S. M., Boldt, R., Skeen, H. R., Johnson, K. P.2015Data supporting a molecular phylogeny of the hyper-diverse genus Brueelia
K. P. Johnson, Allen, J. M., Olds, B. P., Mugisha, L., Reed, D. L., Paige, K. N., Pittendrigh, B. R.2014Rates of genomic divergence in humans, chimpanzees and their lice
K. P. Johnson, Dietrich, C. H., Friedrich, F., Beutel, R. G., Wipfler, B., Peters, R. S., Allen, J. M., Petersen, M., Donath, A., Walden, K. K. O., Kozlov, A. M., Podsiadlowski, L., Mayer, C., Meusemann, K., Vasilikopoulos, A., Waterhouse, R. M., Cameron, S. L., Weirauch, C., Swanson, D. R., Percy, D. M., Hardy, N. B., Terry, I., Liu, S., Zhou, X., Misof, B., Robertson, H. M., Yoshizawa, K.2018Phylogenomics and the evolution of hemipteroid insects
K. P. Johnson, Nguyen, N. -phuong, Sweet, A. D., Boyd, B. M., Warnow, T., Allen, J. M.2018Simultaneous radiation of bird and mammal lice following the K-Pg boundary
S. T. A. N. I. S. L. A. V. KOLENCIK, Cacioppo, J. A., Johnson, K. P., Allen, J. M., Sychra, O., Weckstein, J. D.2022Phylogenetics and host‐specificity of the mega‐diverse louse genus Myrsidea (Amblycera: Menoponidae)
S. T. A. N. I. S. L. A. V. KOLENCIK, Johnson, K. P., Grant, A. R., Valim, M. Paiva, Kuabara, K. M. D., Weckstein, J. D., Allen, J. M.2022Molecular phylogenetics of the avian feather louse Philopterus-complex (Phthiraptera: Philopteridae)
S. T. A. N. I. S. L. A. V. KOLENCIK, Stanley, E. L., Punnath, A., Grant, A. R., Doña, J., Johnson, K. P., Allen, J. M.2004Parasite escape mechanisms drive morphological diversification in avian lice
R. S. de_Moya, Allen, J. M., Sweet, A. D., Walden, K. K. O., Palma, R. L., Smith, V. Stuart, Cameron, S. L., Valim, M. Paiva, Galloway, T. D., Weckstein, J. D., Johnson, K. P.2019Extensive host-switching of avian feather lice following the Cretaceous-Paleogene mass extinction event
J. Soto-Patiño, Londoño, G. A., Johnson, K. P., Weckstein, J. D., Avendaño, J. Enrique, Catanach, T. A., Sweet, A. D., Cook, A. T., Jamkowski, J. E., Allen, J. M.2018Composition and distribution of lice (Insecta: Phthiraptera) on Colombian and Peruvian birds: New data on louse-host association in the Neotropics
A. D. Sweet, Allen, J. M., Johnson, K. P.2014Novel Primers From Informative Nuclear Loci for Louse Molecular Phylogenetics (Insecta: Phthiraptera)
A. D. Sweet, Boyd, B. M., Allen, J. M., Villa, S. M., Valim, M. Paiva, Rivera-Parra, J. L., Wilson, R. E., Johnson, K. P.2018Integrating phylogenomic and population genomic patterns in avian lice provides a more complete picture of parasite evolution
A. D. Sweet, Bush, S. E., Gustafsson, D. R., Allen, J. M., DiBlasi, E., Skeen, H. R., Weckstein, J. D., Johnson, K. P.2018Host and parasite morphology influence congruence between host and parasite phylogenies
S. Virrueta-Herrera, Sweet, A. D., Allen, J. M., Walden, K. K. O., Weckstein, J. D., Johnson, K. P.2020Extensive in situ radiation of feather lice on tinamous
Scratchpads developed and conceived by (alphabetical): Ed Baker, Katherine Bouton Alice Heaton Dimitris Koureas, Laurence Livermore, Dave Roberts, Simon Rycroft, Ben Scott, Vince Smith