Literature

Authorssort descendingYearTitle
L. Alickovic, Johnson, K. P., Boyd, B. M.2021The reduced genome of a heritable symbiont from an ectoparasitic feather feeding louse
J. M. Allen, Boyd, B. M., Nguyen, N. -phuong, Vachaspati, P., Warnow, T., Huang, D. I., Grady, P. G. S., Bell, K. C., Cronk, Q. C., Mugisha, L., Pittendrigh, B. R., Leonardi, M. Soledad, Reed, D. L., Johnson, K. P.2017Phylogenomics from Whole Genome Sequences Using aTRAM
J. M. Allen, LaFrance, R., Folk, R. A., Johnson, K. P., Guralnick, R. P.2018aTRAM 2.0: An Improved, Flexible Locus Assembler for NGS Data
K. C. Bell, Allen, J. M., Johnson, K. P., Demboski, J. R., Cook, J. A.2020Disentangling lousy relationships: Comparative phylogenomics of two sucking louse lineages parasitizing chipmunks
B. M. Boyd, Allen, J. M., Koga, R., Fukatsu, T., Sweet, A. D., Johnson, K. P., Reed, D. L.2016Two Bacterial Genera, Sodalis and Rickettsia, Associated with the Seal Louse Proechinophthirus fluctus (Phthiraptera: Anoplura)
B. M. Boyd, Allen, J. M., Nguyen, N. -phuong, Sweet, A. D., Warnow, T., Shapiro, M. D., Villa, S. M., Bush, S. E., Clayton, D. H., Johnson, K. P.2017Phylogenomics using Target-restricted Assembly Resolves Intra-generic Relationships of Parasitic Lice (Phthiraptera: Columbicola)
B. M. Boyd, Allen, J. M., Nguyen, N. -phuong, Vachaspati, P., Quicksall, Z. S., Warnow, T., Mugisha, L., Johnson, K. P., Reed, D. L.2017Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice
B. M. Boyd, Nguyen, N. -phuong, Allen, J. M., Waterhouse, R. M., Vo, K. B., Sweet, A. D., Clayton, D. H., Bush, S. E., Shapiro, M. D., Johnson, K. P.2022Long-distance dispersal of pigeons and doves generated new ecological opportunities for host-switching and adaptive radiation by their parasites
J. G. Baldwin-Brown, Villa, S. M., Vickrey, A. I., Johnson, K. P., Bush, S. E., Clayton, D. H., Shapiro, M. D.2020The assembled and annotated genome of the pigeon louse Columbicola columbae, a model ectoparasite
J. G. Baldwin-Brown, Villa, S. M., Vickrey, A. I., Johnson, K. P., Bush, S. E., Clayton, D. H., Shapiro, M. D.2021The assembled and annotated genome of the pigeon louse Columbicola columbae, a model ectoparasite
S. E. Bush, Villa, S. M., Altuna, J. C., Johnson, K. P., Shapiro, M. D., Clayton, D. H.2019Host defense triggers rapid adaptive radiation in experimentally evolving parasites
S. L. Cameron, Yoshizawa, K., Mizukoshi, A., Whiting, M. F., Johnson, K. P.2011Mitochondrial genome deletions and minicirclesare common in lice (Insecta: Phthiraptera)
T. A. Catanach, Johnson, K. P., Marks, B. D., Moyle, R. G., Valim, M. Paiva, Weckstein, J. D.2019Two lineages of kingfisher feather lice exhibit differing degrees of cospeciation with their hosts
T. A. Catanach, Valim, M. Paiva, Weckstein, J. D., Johnson, K. P.2018Cophylogenetic analysis of lice in the Colpocephalum complex (Phthiraptera: Amblycera)
D. H. Clayton, Bush, S. E., Johnson, K. P.2015Coevolution of Life on Hosts
E. DiBlasi, Johnson, K. P., Stringham, S. A., Hansen, A. N., Beach, A. B., Clayton, D. H., Bush, S. E.2018Phoretic dispersal influences parasite population genetic structure
J. Doña, Johnson K. P.2023Host body size, not host population size, predicts genome-wide effective population size of parasites
J. Doña, Johnson K. P.2020Assessing symbiont extinction risk using cophylogenetic data
J. Doña, Osuna-Mascaró, C., Johnson, K. P., Serrano, D., Aymí, R., Jovani, R.2019Persistence of single species of symbionts across multiple closely-related host species
J. Doña, Proctor, H. C., Serrano, D., Johnson, K. P., van Oploo, A. Oddy‐, Huguet‐Tapia, J. C., Ascunce, M. S., Jovani, R.2018Feather mites play a role in cleaning host feathers: New insights from DNA metabarcoding and microscopy
J. Doña, Sweet, A. D., Johnson, K. P.2020Comparing rates of introgression in parasitic feather lice with differing dispersal capabilities
J. Doña, Sweet, A. D., Johnson, K. P.2019Parasite dispersal influences introgression rate
J. Doña, Virrueta-Herrera, S., Nyman, T., Kunnasranta, M., Johnson, K. P.2021Patterns of Microbiome Variation Among Infrapopulations of Permanent Bloodsucking Parasites
K. P. Johnson2022Genomic Approaches to Uncovering the Coevolutionary History of Parasitic Lice
K. P. Johnson, Clayton, D. H., Dumbacher, J. P., Fleischer, R. C.2010The flight of the Passenger Pigeon: Phylogenetics and biogeographic history of an extinct species
K. P. Johnson, Dietrich, C. H., Friedrich, F., Beutel, R. G., Wipfler, B., Peters, R. S., Allen, J. M., Petersen, M., Donath, A., Walden, K. K. O., Kozlov, A. M., Podsiadlowski, L., Mayer, C., Meusemann, K., Vasilikopoulos, A., Waterhouse, R. M., Cameron, S. L., Weirauch, C., Swanson, D. R., Percy, D. M., Hardy, N. B., Terry, I., Liu, S., Zhou, X., Misof, B., Robertson, H. M., Yoshizawa, K.2018Phylogenomics and the evolution of hemipteroid insects
K. P. Johnson, Matthee, C. A., Doña, J.2022Phylogenomics reveals the origin of mammal lice out of Afrotheria
K. P. Johnson, Nguyen, N. -phuong, Sweet, A. D., Boyd, B. M., Warnow, T., Allen, J. M.2018Simultaneous radiation of bird and mammal lice following the K-Pg boundary
K. P. Johnson, Shreve, S. M., Smith, V. Stuart2012Repeated adaptive divergence of microhabitat specialization in avian feather lice
K. P. Johnson, Weckstein, J. D., Bush, S. E., Clayton, D. H.2011The evolution of host specificity in dove body lice
K. P. Johnson, Weckstein, J. D., Meyer, M. J., Clayton, D. H.2011There and back again: switching between host orders by avian body lice (Ischnocera: Goniodidae)
K. P. Johnson, Weckstein, J. D., Virrueta-Herrera, S., Doña, J.2021The interplay between host biogeography and phylogeny in structuring diversification of the feather louse genus Penenirmus
S. T. A. N. I. S. L. A. V. KOLENCIK, Cacioppo, J. A., Johnson, K. P., Allen, J. M., Sychra, O., Weckstein, J. D.2022Phylogenetics and host‐specificity of the mega‐diverse louse genus Myrsidea (Amblycera: Menoponidae)
S. T. A. N. I. S. L. A. V. KOLENCIK, Johnson, K. P., Grant, A. R., Valim, M. Paiva, Kuabara, K. M. D., Weckstein, J. D., Allen, J. M.2022Molecular phylogenetics of the avian feather louse Philopterus-complex (Phthiraptera: Philopteridae)
S. T. A. N. I. S. L. A. V. KOLENCIK, Stanley, E. L., Punnath, A., Grant, A. R., Doña, J., Johnson, K. P., Allen, J. M.2004Parasite escape mechanisms drive morphological diversification in avian lice
M. Soledad Leonardi, Virrueta-Herrera, S., Sweet, A. D., Negrete, J., Johnson, K. P.2019Phylogenomic analysis of seal lice reveals codivergence with their hosts
J. E. Light, Harper, S. E., Johnson, K. P., Demastes, J. W., Spradling, T. A.2018Development and Characterization of 12 Novel Polymorphic Microsatellite Loci for the Mammal Chewing Louse Geomydoecus aurei (Insecta: Phthiraptera) and a Comparison of Next-Generation Sequencing Approaches for Use in Parasitology
A. Mizukoshi, Johnson, K. P., Yoshizawa, K.2012Co-phylogeography and morphological evolution of sika deer lice (Damalinia sika) with their hosts (Cervus nippon)
R. S. de_Moya, Allen, J. M., Sweet, A. D., Walden, K. K. O., Palma, R. L., Smith, V. Stuart, Cameron, S. L., Valim, M. Paiva, Galloway, T. D., Weckstein, J. D., Johnson, K. P.2019Extensive host-switching of avian feather lice following the Cretaceous-Paleogene mass extinction event
R. S. de_Moya, Yoshizawa, K., Walden, K. K. O., Sweet, A. D., Dietrich, C. H., Johnson, K. P.2020Phylogenomics of parasitic and non-parasitic lice (Insecta: Psocodea): Combining sequence data and Exploring compositional bias solutions in Next Generation Datasets
T. Najer, Papoušek, I., Sychra, O., Sweet, A. D., Johnson, K. P.2021Combining Nuclear and Mitochondrial Loci Provides Phylogenetic Information in the Philopterus Complex of Lice (Psocodea: Ischnocera: Philopteridae)
J. L. Rivera-Parra, Levin, I. I., Johnson, K. P., Parker, P. G.2017Host sympatry and body size influence parasite straggling rate in a highly connected multihost, multiparasite system
J. Soto-Patiño, Londoño, G. A., Johnson, K. P., Weckstein, J. D., Avendaño, J. Enrique, Catanach, T. A., Sweet, A. D., Cook, A. T., Jamkowski, J. E., Allen, J. M.2018Composition and distribution of lice (Insecta: Phthiraptera) on Colombian and Peruvian birds: New data on louse-host association in the Neotropics
A. D. Sweet, Boyd, B. M., Allen, J. M., Villa, S. M., Valim, M. Paiva, Rivera-Parra, J. L., Wilson, R. E., Johnson, K. P.2018Integrating phylogenomic and population genomic patterns in avian lice provides a more complete picture of parasite evolution
A. D. Sweet, Browne, D. R., Hernandez, A. G., Johnson, K. P., Cameron, S. L.2023Draft genome assemblies of the avian louse Brueelia nebulosa and its associates using long-read sequencing from an individual specimen
A. D. Sweet, Bush, S. E., Gustafsson, D. R., Allen, J. M., DiBlasi, E., Skeen, H. R., Weckstein, J. D., Johnson, K. P.2018Host and parasite morphology influence congruence between host and parasite phylogenies
A. D. Sweet, R Chesser, T., Johnson, K. P.2017Comparative cophylogenetics of Australian phabine pigeons and doves (Aves: Columbidae) and their feather lice (Insecta: Phthiraptera)
A. D. Sweet, Johnson K. P.2018The role of parasite dispersal in shaping a host-parasite system at multiple evolutionary scales
A. D. Sweet, Johnson, K. P., Cameron, S. L.2022Independent evolution of highly variable, fragmented mitogenomes of parasitic lice
A. D. Sweet, Johnson, K. P., Cameron, S. L.2020Mitochondrial genomes of Columbicola feather lice are highly fragmented, indicating repeated evolution of minicircle-type genomes in parasitic lice

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Scratchpads developed and conceived by (alphabetical): Ed Baker, Katherine Bouton Alice Heaton Dimitris Koureas, Laurence Livermore, Dave Roberts, Simon Rycroft, Ben Scott, Vince Smith