Literature

Authors	Year	Title
A. D. Sweet, Browne, D. R., Hernandez, A. G., Johnson, K. P., Cameron, S. L.	2023	Draft genome assemblies of the avian louse Brueelia nebulosa and its associates using long-read sequencing from an individual specimen
J. Doña, Johnson K. P.	2023	Host body size, not host population size, predicts genome-wide effective population size of parasites
S. T. A. N. I. S. L. A. V. KOLENCIK, Johnson, K. P., Grant, A. R., Valim, M. Paiva, Kuabara, K. M. D., Weckstein, J. D., Allen, J. M.	2022	Molecular phylogenetics of the avian feather louse Philopterus-complex (Phthiraptera: Philopteridae)
B. M. Boyd, Nguyen, N. -phuong, Allen, J. M., Waterhouse, R. M., Vo, K. B., Sweet, A. D., Clayton, D. H., Bush, S. E., Shapiro, M. D., Johnson, K. P.	2022	Long-distance dispersal of pigeons and doves generated new ecological opportunities for host-switching and adaptive radiation by their parasites
K. P. Johnson	2022	Genomic Approaches to Uncovering the Coevolutionary History of Parasitic Lice
K. P. Johnson, Matthee, C. A., Doña, J.	2022	Phylogenomics reveals the origin of mammal lice out of Afrotheria
S. Virrueta-Herrera, Johnson, K. P., Sweet, A. D., Ylinen, E., Kunnasranta, M., Nyman, T.	2022	High levels of inbreeding with spatial and host‐associated structure in lice of an endangered freshwater seal
S. T. A. N. I. S. L. A. V. KOLENCIK, Cacioppo, J. A., Johnson, K. P., Allen, J. M., Sychra, O., Weckstein, J. D.	2022	Phylogenetics and host‐specificity of the mega‐diverse louse genus Myrsidea (Amblycera: Menoponidae)
A. D. Sweet, Johnson, K. P., Cameron, S. L.	2022	Independent evolution of highly variable, fragmented mitogenomes of parasitic lice
L. Alickovic, Johnson, K. P., Boyd, B. M.	2021	The reduced genome of a heritable symbiont from an ectoparasitic feather feeding louse
K. P. Johnson, Weckstein, J. D., Virrueta-Herrera, S., Doña, J.	2021	The interplay between host biogeography and phylogeny in structuring diversification of the feather louse genus Penenirmus
J. Doña, Virrueta-Herrera, S., Nyman, T., Kunnasranta, M., Johnson, K. P.	2021	Patterns of Microbiome Variation Among Infrapopulations of Permanent Bloodsucking Parasites
J. G. Baldwin-Brown, Villa, S. M., Vickrey, A. I., Johnson, K. P., Bush, S. E., Clayton, D. H., Shapiro, M. D.	2021	The assembled and annotated genome of the pigeon louse Columbicola columbae, a model ectoparasite
T. Najer, Papoušek, I., Sychra, O., Sweet, A. D., Johnson, K. P.	2021	Combining Nuclear and Mitochondrial Loci Provides Phylogenetic Information in the Philopterus Complex of Lice (Psocodea: Ischnocera: Philopteridae)
A. D. Sweet, Johnson, K. P., Cao, Y., de_Moya, R. S., Skinner, R. K., Tan, M., Virrueta-Herrera, S., Cameron, S. L.	2021	Structure, gene order, and nucleotide composition of mitochondrial genomes in parasitic lice from Amblycera
S. Virrueta-Herrera, Sweet, A. D., Allen, J. M., Walden, K. K. O., Weckstein, J. D., Johnson, K. P.	2020	Extensive in situ radiation of feather lice on tinamous
A. D. Sweet, Wilson, R. E., Sonsthagen, S. A., Johnson, K. P.	2020	Lousy grouse: Comparing evolutionary patterns in Alaska galliform lice to understand host evolution and host–parasite interactions
J. Doña, Sweet, A. D., Johnson, K. P.	2020	Comparing rates of introgression in parasitic feather lice with differing dispersal capabilities
A. D. Sweet, Johnson, K. P., Cameron, S. L.	2020	Mitochondrial genomes of Columbicola feather lice are highly fragmented, indicating repeated evolution of minicircle-type genomes in parasitic lice
J. Doña, Johnson K. P.	2020	Assessing symbiont extinction risk using cophylogenetic data
J. G. Baldwin-Brown, Villa, S. M., Vickrey, A. I., Johnson, K. P., Bush, S. E., Clayton, D. H., Shapiro, M. D.	2020	The assembled and annotated genome of the pigeon louse Columbicola columbae, a model ectoparasite
K. C. Bell, Allen, J. M., Johnson, K. P., Demboski, J. R., Cook, J. A.	2020	Disentangling lousy relationships: Comparative phylogenomics of two sucking louse lineages parasitizing chipmunks
R. S. de_Moya, Yoshizawa, K., Walden, K. K. O., Sweet, A. D., Dietrich, C. H., Johnson, K. P.	2020	Phylogenomics of parasitic and non-parasitic lice (Insecta: Psocodea): Combining sequence data and Exploring compositional bias solutions in Next Generation Datasets
T. A. Catanach, Johnson, K. P., Marks, B. D., Moyle, R. G., Valim, M. Paiva, Weckstein, J. D.	2019	Two lineages of kingfisher feather lice exhibit differing degrees of cospeciation with their hosts
S. M. Villa, Altuna, J. C., Ruff, J. S., Beach, A. B., Mulvey, L. I., Poole, E. J., Campbell, H. E., Johnson, K. P., Shapiro, M. D., Bush, S. E., Clayton, D. H.	2019	Rapid experimental evolution of reproductive isolation from a single natural population
R. S. de_Moya, Allen, J. M., Sweet, A. D., Walden, K. K. O., Palma, R. L., Smith, V. Stuart, Cameron, S. L., Valim, M. Paiva, Galloway, T. D., Weckstein, J. D., Johnson, K. P.	2019	Extensive host-switching of avian feather lice following the Cretaceous-Paleogene mass extinction event
S. E. Bush, Villa, S. M., Altuna, J. C., Johnson, K. P., Shapiro, M. D., Clayton, D. H.	2019	Host defense triggers rapid adaptive radiation in experimentally evolving parasites
J. Doña, Osuna-Mascaró, C., Johnson, K. P., Serrano, D., Aymí, R., Jovani, R.	2019	Persistence of single species of symbionts across multiple closely-related host species
J. Doña, Sweet, A. D., Johnson, K. P.	2019	Parasite dispersal influences introgression rate
M. Soledad Leonardi, Virrueta-Herrera, S., Sweet, A. D., Negrete, J., Johnson, K. P.	2019	Phylogenomic analysis of seal lice reveals codivergence with their hosts
A. D. Sweet, Boyd, B. M., Allen, J. M., Villa, S. M., Valim, M. Paiva, Rivera-Parra, J. L., Wilson, R. E., Johnson, K. P.	2018	Integrating phylogenomic and population genomic patterns in avian lice provides a more complete picture of parasite evolution
T. A. Catanach, Valim, M. Paiva, Weckstein, J. D., Johnson, K. P.	2018	Cophylogenetic analysis of lice in the Colpocephalum complex (Phthiraptera: Amblycera)
K. P. Johnson, Nguyen, N. -phuong, Sweet, A. D., Boyd, B. M., Warnow, T., Allen, J. M.	2018	Simultaneous radiation of bird and mammal lice following the K-Pg boundary
A. D. Sweet, Bush, S. E., Gustafsson, D. R., Allen, J. M., DiBlasi, E., Skeen, H. R., Weckstein, J. D., Johnson, K. P.	2018	Host and parasite morphology influence congruence between host and parasite phylogenies
J. Soto-Patiño, Londoño, G. A., Johnson, K. P., Weckstein, J. D., Avendaño, J. Enrique, Catanach, T. A., Sweet, A. D., Cook, A. T., Jamkowski, J. E., Allen, J. M.	2018	Composition and distribution of lice (Insecta: Phthiraptera) on Colombian and Peruvian birds: New data on louse-host association in the Neotropics
E. DiBlasi, Johnson, K. P., Stringham, S. A., Hansen, A. N., Beach, A. B., Clayton, D. H., Bush, S. E.	2018	Phoretic dispersal influences parasite population genetic structure
J. E. Light, Harper, S. E., Johnson, K. P., Demastes, J. W., Spradling, T. A.	2018	Development and Characterization of 12 Novel Polymorphic Microsatellite Loci for the Mammal Chewing Louse Geomydoecus aurei (Insecta: Phthiraptera) and a Comparison of Next-Generation Sequencing Approaches for Use in Parasitology
K. P. Johnson, Dietrich, C. H., Friedrich, F., Beutel, R. G., Wipfler, B., Peters, R. S., Allen, J. M., Petersen, M., Donath, A., Walden, K. K. O., Kozlov, A. M., Podsiadlowski, L., Mayer, C., Meusemann, K., Vasilikopoulos, A., Waterhouse, R. M., Cameron, S. L., Weirauch, C., Swanson, D. R., Percy, D. M., Hardy, N. B., Terry, I., Liu, S., Zhou, X., Misof, B., Robertson, H. M., Yoshizawa, K.	2018	Phylogenomics and the evolution of hemipteroid insects
A. D. Sweet, Johnson K. P.	2018	The role of parasite dispersal in shaping a host-parasite system at multiple evolutionary scales
J. Doña, Proctor, H. C., Serrano, D., Johnson, K. P., van Oploo, A. Oddy‐, Huguet‐Tapia, J. C., Ascunce, M. S., Jovani, R.	2018	Feather mites play a role in cleaning host feathers: New insights from DNA metabarcoding and microscopy
J. M. Allen, LaFrance, R., Folk, R. A., Johnson, K. P., Guralnick, R. P.	2018	aTRAM 2.0: An Improved, Flexible Locus Assembler for NGS Data
A. D. Sweet, R Chesser, T., Johnson, K. P.	2017	Comparative cophylogenetics of Australian phabine pigeons and doves (Aves: Columbidae) and their feather lice (Insecta: Phthiraptera)
J. M. Allen, Boyd, B. M., Nguyen, N. -phuong, Vachaspati, P., Warnow, T., Huang, D. I., Grady, P. G. S., Bell, K. C., Cronk, Q. C., Mugisha, L., Pittendrigh, B. R., Leonardi, M. Soledad, Reed, D. L., Johnson, K. P.	2017	Phylogenomics from Whole Genome Sequences Using aTRAM
B. M. Boyd, Allen, J. M., Nguyen, N. -phuong, Vachaspati, P., Quicksall, Z. S., Warnow, T., Mugisha, L., Johnson, K. P., Reed, D. L.	2017	Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice
B. M. Boyd, Allen, J. M., Nguyen, N. -phuong, Sweet, A. D., Warnow, T., Shapiro, M. D., Villa, S. M., Bush, S. E., Clayton, D. H., Johnson, K. P.	2017	Phylogenomics using Target-restricted Assembly Resolves Intra-generic Relationships of Parasitic Lice (Phthiraptera: Columbicola)
J. L. Rivera-Parra, Levin, I. I., Johnson, K. P., Parker, P. G.	2017	Host sympatry and body size influence parasite straggling rate in a highly connected multihost, multiparasite system
A. D. Sweet, Boyd, B. M., Johnson, K. P.	2016	Cophylogenetic patterns are uncorrelated between two lineages of parasites on the same hosts
A. D. Sweet, Johnson K. P.	2016	Cophylogenetic analysis of New World ground-doves (Aves: Columbidae) and their parasitic wing lice (Insecta: Phthiraptera: Columbicola)
S. E. Bush, Weckstein, J. D., Gustafsson, D. R., Allen, J. M., DiBlasi, E., Shreve, S. M., Boldt, R., Skeen, H. R., Johnson, K. P.	2016	Unlocking the black box of feather louse diversity: A molecular phylogeny of the hyper-diverse genus Brueelia
G. C. ESCALANTE, Sweet, A. D., MCCRACKEN, K. G., Gustafsson, D. R., Wilson, R. E., Johnson, K. P.	2016	Patterns of cryptic host specificity in duck lice based on molecular data