Literature

Authorssort descendingYearTitle
L. Alickovic, Johnson, K. P., Boyd, B. M.2021The reduced genome of a heritable symbiont from an ectoparasitic feather feeding louse
J. M. Allen, Boyd, B. M., Nguyen, N. -phuong, Vachaspati, P., Warnow, T., Huang, D. I., Grady, P. G. S., Bell, K. C., Cronk, Q. C., Mugisha, L., Pittendrigh, B. R., Leonardi, M. Soledad, Reed, D. L., Johnson, K. P.2017Phylogenomics from Whole Genome Sequences Using aTRAM
J. M. Allen, Huang, D. I., Cronk, Q. C., Johnson, K. P.2015aTRAM - automated target restricted assembly method: a fast method for assembling loci across divergent taxa from next-generation sequencing data
J. M. Allen, LaFrance, R., Folk, R. A., Johnson, K. P., Guralnick, R. P.2018aTRAM 2.0: An Improved, Flexible Locus Assembler for NGS Data
S. C. Barker, Whiting, M. F., Johnson, K. P., Murrell, A.2003Phylogeny of the lice (Insecta: Phthiraptera) inferred from small subunit rRNA
K. C. Bell, Allen, J. M., Johnson, K. P., Demboski, J. R., Cook, J. A.2020Disentangling lousy relationships: Comparative phylogenomics of two sucking louse lineages parasitizing chipmunks
B. M. Boyd, Allen, J. M., Koga, R., Fukatsu, T., Sweet, A. D., Johnson, K. P., Reed, D. L.2016Two Bacterial Genera, Sodalis and Rickettsia, Associated with the Seal Louse Proechinophthirus fluctus (Phthiraptera: Anoplura)
B. M. Boyd, Allen, J. M., Nguyen, N. -phuong, Sweet, A. D., Warnow, T., Shapiro, M. D., Villa, S. M., Bush, S. E., Clayton, D. H., Johnson, K. P.2017Phylogenomics using Target-restricted Assembly Resolves Intra-generic Relationships of Parasitic Lice (Phthiraptera: Columbicola)
B. M. Boyd, Allen, J. M., Nguyen, N. -phuong, Vachaspati, P., Quicksall, Z. S., Warnow, T., Mugisha, L., Johnson, K. P., Reed, D. L.2017Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice
B. M. Boyd, Nguyen, N. -phuong, Allen, J. M., Waterhouse, R. M., Vo, K. B., Sweet, A. D., Clayton, D. H., Bush, S. E., Shapiro, M. D., Johnson, K. P.2022Long-distance dispersal of pigeons and doves generated new ecological opportunities for host-switching and adaptive radiation by their parasites
J. G. Baldwin-Brown, Villa, S. M., Vickrey, A. I., Johnson, K. P., Bush, S. E., Clayton, D. H., Shapiro, M. D.2020The assembled and annotated genome of the pigeon louse Columbicola columbae, a model ectoparasite
J. G. Baldwin-Brown, Villa, S. M., Vickrey, A. I., Johnson, K. P., Bush, S. E., Clayton, D. H., Shapiro, M. D.2021The assembled and annotated genome of the pigeon louse Columbicola columbae, a model ectoparasite
C. Bueter, Weckstein, J. D., Johnson, K. P., Bates, J. M., Gordon, C. E.2009Comparative phylogenetic histories of two louse genera found on Catharus thrushes and other birds.
S. E. Bush, Villa, S. M., Altuna, J. C., Johnson, K. P., Shapiro, M. D., Clayton, D. H.2019Host defense triggers rapid adaptive radiation in experimentally evolving parasites
S. E. Bush, Weckstein, J. D., Gustafsson, D. R., Allen, J. M., DiBlasi, E., Shreve, S. M., Boldt, R., Skeen, H. R., Johnson, K. P.2016Unlocking the black box of feather louse diversity: A molecular phylogeny of the hyper-diverse genus Brueelia
S. E. Bush, Weckstein, J. D., Gustafsson, D. R., Allen, J. M., DiBlasi, E., Shreve, S. M., Boldt, R., Skeen, H. R., Johnson, K. P.2015Data supporting a molecular phylogeny of the hyper-diverse genus Brueelia
S. L. Cameron, Covacin, C., Johnson, K. P.2006Evolution of the mitochondrial genomes of lice
S. L. Cameron, Johnson, K. P., Whiting, M. F.2007The Mitochondrial Genome of the Screamer Louse Bothriometopus (Phthiraptera: Ischnocera): Effects of ExtensiveGene Rearrangements on the Evolution of the Genome
S. L. Cameron, Yoshizawa, K., Mizukoshi, A., Whiting, M. F., Johnson, K. P.2011Mitochondrial genome deletions and minicirclesare common in lice (Insecta: Phthiraptera)
T. A. Catanach, Johnson K. P.2015Independent origins of the feather lice (Insecta: Degeeriella ) of raptors
T. A. Catanach, Johnson, K. P., Marks, B. D., Moyle, R. G., Valim, M. Paiva, Weckstein, J. D.2019Two lineages of kingfisher feather lice exhibit differing degrees of cospeciation with their hosts
T. A. Catanach, Valim, M. Paiva, Weckstein, J. D., Johnson, K. P.2018Cophylogenetic analysis of lice in the Colpocephalum complex (Phthiraptera: Amblycera)
D. H. Clayton, Bush, S. E., Goates, B. M., Johnson, K. P.2003Host defense reinforces host-parasite cospeciation
D. H. Clayton, Bush, S. E., Johnson, K. P.2015Coevolution of Life on Hosts
D. H. Clayton, Bush, S. E., Johnson, K. P.2004Ecology of Congruence: Past Meets Present
D. H. Clayton, Johnson K. P.2003Linking coevolutionary history to ecological process: Doves and lice
D. H. Clayton, Johnson K. P.2001Lice as probes
D. H. Clayton, Johnson K. P.2001What's bugging brood parasites?
D. H. Clayton, Price, R. D., Johnson, K. P.2006Two new species of Dennyus (Collodennyus) chewing lice (Phthiraptera: Amblycera: Menoponidae) from swiftlets (Apodiformes: Apodidae)
R. H. Cruickshank, Johnson, K. P., Smith, V. Stuart, Adams, R. J., Clayton, D. H., Page, R. D. M.2001Phylogenetic analysis of partial sequences of Elongation Factor 1alpha identifies major groups of lice (Insecta: Phthiraptera)
E. DiBlasi, Johnson, K. P., Stringham, S. A., Hansen, A. N., Beach, A. B., Clayton, D. H., Bush, S. E.2018Phoretic dispersal influences parasite population genetic structure
J. Doña, Johnson K. P.2023Host body size, not host population size, predicts genome-wide effective population size of parasites
J. Doña, Johnson K. P.2020Assessing symbiont extinction risk using cophylogenetic data
J. Doña, Osuna-Mascaró, C., Johnson, K. P., Serrano, D., Aymí, R., Jovani, R.2019Persistence of single species of symbionts across multiple closely-related host species
J. Doña, Proctor, H. C., Serrano, D., Johnson, K. P., van Oploo, A. Oddy‐, Huguet‐Tapia, J. C., Ascunce, M. S., Jovani, R.2018Feather mites play a role in cleaning host feathers: New insights from DNA metabarcoding and microscopy
J. Doña, Sweet, A. D., Johnson, K. P.2020Comparing rates of introgression in parasitic feather lice with differing dispersal capabilities
J. Doña, Sweet, A. D., Johnson, K. P.2019Parasite dispersal influences introgression rate
J. Doña, Virrueta-Herrera, S., Nyman, T., Kunnasranta, M., Johnson, K. P.2021Patterns of Microbiome Variation Among Infrapopulations of Permanent Bloodsucking Parasites
G. C. ESCALANTE, Sweet, A. D., MCCRACKEN, K. G., Gustafsson, D. R., Wilson, R. E., Johnson, K. P.2016Patterns of cryptic host specificity in duck lice based on molecular data
J. Hughes, Kennedy, M., Johnson, K. P., Palma, R. L., Page, R. D. M.2007Multiple cophylogenetic analyses reveal frequent cospeciation between Pelecaniform birds and Pectinopygus lice
K. P. Johnson2022Genomic Approaches to Uncovering the Coevolutionary History of Parasitic Lice
K. P. Johnson2006The origin and diversification of lice (Phthiraptera)
K. P. Johnson, Adams, R. J., Clayton, D. H.2002The phylogeny of the louse genus Brueelia does not reflect host phylogeny
K. P. Johnson, Adams, R. J., Clayton, D. H.2001Molecular systematics of Goniodidae (Insecta : Phthiraptera)
K. P. Johnson, Adams, R. J., Page, R. D. M., Clayton, D. H.2003When do parasites fail to speciate in response to host speciation?
K. P. Johnson, Allen, J. M., Olds, B. P., Mugisha, L., Reed, D. L., Paige, K. N., Pittendrigh, B. R.2014Rates of genomic divergence in humans, chimpanzees and their lice
K. P. Johnson, Bush, S. E., Clayton, D. H.2005Correlated evolution of host and parasite body size: Tests of Harrison's Rule using birds and lice
K. P. Johnson, Clayton D. H.2004Untangling coevolutionary history
K. P. Johnson, Clayton D. H.2000Nuclear and mitochondrial genes contain similar phylogenetic signal for pigeons and doves (Aves: Columbiformes)
K. P. Johnson, Clayton D. H.2000A molecular phylogeny of the dove genus Zenaida: Mitochondrial and nuclear DNA sequences

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Scratchpads developed and conceived by (alphabetical): Ed Baker, Katherine Bouton Alice Heaton Dimitris Koureas, Laurence Livermore, Dave Roberts, Simon Rycroft, Ben Scott, Vince Smith