Literature

Authors	Year	Title
J. Hughes, Kennedy, M., Johnson, K. P., Palma, R. L., Page, R. D. M.	2007	Multiple cophylogenetic analyses reveal frequent cospeciation between Pelecaniform birds and Pectinopygus lice
M. J. Meyer, Price, R. D., Johnson, K. P.	2008	A new species of Picicola Clay and Meinertzhagen, 1938 (Phthiraptera: Ischnocera) parasitic on the Rufous-sided Broadbill (Passeriformes: Eurylaimidae) in Ghana
R. D. Price, Johnson, K. P., Dalgleish, R. C.	2008	Five new species of Myrsidea Waterston (Phthiraptera: Menoponidae) from saltators and grosbeaks (Passeriformes: Cardinalidae)
R. D. Price, Johnson, K. P., Dalgleish, R. C.	2008	Five new species of Myrsidea Waterston (Phthiraptera: Menoponidae) from antshrikes and antbirds (Passeriformes: Thamnophilidae)
K. Yoshizawa, Johnson K. P.	2008	Molecular systematics of the barklouse family Psocidae (Insecta: Psocodea: ‘Psocoptera’) and implications for morphological and behavioral evolution
R. D. Price, Johnson, K. P., Palma, R. L.	2008	A review of the genus Forficuloecus Conci (Phthiraptera: Philopteridae) from parrots (Psittaciformes: Psittacidae), with descriptions of four new species
R. D. Price, Johnson, K. P., Dalgleish, R. C.	2008	Myrsidea Waterston (Phthiraptera: Menoponidae) from wrens (Passeriformes: Troglodytidae), with descriptions of three new species
C. Bueter, Weckstein, J. D., Johnson, K. P., Bates, J. M., Gordon, C. E.	2009	Comparative phylogenetic histories of two louse genera found on Catharus thrushes and other birds.
R. D. Price, Johnson K. P.	2009	Five new species of Myrsidea Waterston (Phthiraptera: Menoponidae) from tanagers (Passeriformes: Thraupidae) in Panama
J. R. Malenke, Johnson, K. P., Clayton, D. H.	2009	Host specialization differentiates cryptic species of feather-feeding lice
K. P. Johnson, Malenke, J. R., Clayton, D. H.	2009	Competition promotes the evolution of host generalists in obligate parasites
K. P. Johnson, Clayton, D. H., Dumbacher, J. P., Fleischer, R. C.	2010	The flight of the Passenger Pigeon: Phylogenetics and biogeographic history of an extinct species
M. Paiva Valim, Price, R. D., Johnson, K. P.	2011	New host records and descriptions of five new species of Myrsidea Waterston, 1915 (Phthiraptera: Menoponidae) from passerine birds (Aves: Passeriformes)
Z. Vas, Lefebvre, L., Johnson, K. P., Reiczigel, J., Rózsa, L.	2011	Clever birds are lousy: Co-variation between avian innovation and the taxonomic richness of their amblyceran lice
K. P. Johnson, Weckstein, J. D., Bush, S. E., Clayton, D. H.	2011	The evolution of host specificity in dove body lice
S. L. Cameron, Yoshizawa, K., Mizukoshi, A., Whiting, M. F., Johnson, K. P.	2011	Mitochondrial genome deletions and minicirclesare common in lice (Insecta: Phthiraptera)
K. P. Johnson, Weckstein, J. D., Meyer, M. J., Clayton, D. H.	2011	There and back again: switching between host orders by avian body lice (Ischnocera: Goniodidae)
A. Mizukoshi, Johnson, K. P., Yoshizawa, K.	2012	Co-phylogeography and morphological evolution of sika deer lice (Damalinia sika) with their hosts (Cervus nippon)
K. P. Johnson, Shreve, S. M., Smith, V. Stuart	2012	Repeated adaptive divergence of microhabitat specialization in avian feather lice
K. P. Johnson, Allen, J. M., Olds, B. P., Mugisha, L., Reed, D. L., Paige, K. N., Pittendrigh, B. R.	2014	Rates of genomic divergence in humans, chimpanzees and their lice
A. D. Sweet, Allen, J. M., Johnson, K. P.	2014	Novel Primers From Informative Nuclear Loci for Louse Molecular Phylogenetics (Insecta: Phthiraptera)
A. Yamagishi, Yao, I., Johnson, K. P., Yoshizawa, K.	2014	Comparisons of Host Specificity in Feather Louse Genera (Insecta: Phthiraptera: Philopteridae) Parasitizing Gulls (Aves: Laridae: Larus )
T. A. Catanach, Johnson K. P.	2015	Independent origins of the feather lice (Insecta: Degeeriella ) of raptors
J. L. Rivera-Parra, Levin, I. I., Johnson, K. P., Parker, P. G.	2015	Lineage sorting in multihost parasites: Eidmanniella albescens and Fregatiella aurifasciata on seabirds from the Galapagos Islands
J. M. Allen, Huang, D. I., Cronk, Q. C., Johnson, K. P.	2015	aTRAM - automated target restricted assembly method: a fast method for assembling loci across divergent taxa from next-generation sequencing data
S. E. Bush, Weckstein, J. D., Gustafsson, D. R., Allen, J. M., DiBlasi, E., Shreve, S. M., Boldt, R., Skeen, H. R., Johnson, K. P.	2015	Data supporting a molecular phylogeny of the hyper-diverse genus Brueelia
D. H. Clayton, Bush, S. E., Johnson, K. P.	2015	Coevolution of Life on Hosts
A. D. Sweet, Boyd, B. M., Johnson, K. P.	2016	Cophylogenetic patterns are uncorrelated between two lineages of parasites on the same hosts
A. D. Sweet, Johnson K. P.	2016	Cophylogenetic analysis of New World ground-doves (Aves: Columbidae) and their parasitic wing lice (Insecta: Phthiraptera: Columbicola)
S. E. Bush, Weckstein, J. D., Gustafsson, D. R., Allen, J. M., DiBlasi, E., Shreve, S. M., Boldt, R., Skeen, H. R., Johnson, K. P.	2016	Unlocking the black box of feather louse diversity: A molecular phylogeny of the hyper-diverse genus Brueelia
G. C. ESCALANTE, Sweet, A. D., MCCRACKEN, K. G., Gustafsson, D. R., Wilson, R. E., Johnson, K. P.	2016	Patterns of cryptic host specificity in duck lice based on molecular data
B. M. Boyd, Allen, J. M., Koga, R., Fukatsu, T., Sweet, A. D., Johnson, K. P., Reed, D. L.	2016	Two Bacterial Genera, Sodalis and Rickettsia, Associated with the Seal Louse Proechinophthirus fluctus (Phthiraptera: Anoplura)
A. D. Sweet, R Chesser, T., Johnson, K. P.	2017	Comparative cophylogenetics of Australian phabine pigeons and doves (Aves: Columbidae) and their feather lice (Insecta: Phthiraptera)
J. M. Allen, Boyd, B. M., Nguyen, N. -phuong, Vachaspati, P., Warnow, T., Huang, D. I., Grady, P. G. S., Bell, K. C., Cronk, Q. C., Mugisha, L., Pittendrigh, B. R., Leonardi, M. Soledad, Reed, D. L., Johnson, K. P.	2017	Phylogenomics from Whole Genome Sequences Using aTRAM
B. M. Boyd, Allen, J. M., Nguyen, N. -phuong, Vachaspati, P., Quicksall, Z. S., Warnow, T., Mugisha, L., Johnson, K. P., Reed, D. L.	2017	Primates, Lice and Bacteria: Speciation and Genome Evolution in the Symbionts of Hominid Lice
B. M. Boyd, Allen, J. M., Nguyen, N. -phuong, Sweet, A. D., Warnow, T., Shapiro, M. D., Villa, S. M., Bush, S. E., Clayton, D. H., Johnson, K. P.	2017	Phylogenomics using Target-restricted Assembly Resolves Intra-generic Relationships of Parasitic Lice (Phthiraptera: Columbicola)
J. L. Rivera-Parra, Levin, I. I., Johnson, K. P., Parker, P. G.	2017	Host sympatry and body size influence parasite straggling rate in a highly connected multihost, multiparasite system
A. D. Sweet, Boyd, B. M., Allen, J. M., Villa, S. M., Valim, M. Paiva, Rivera-Parra, J. L., Wilson, R. E., Johnson, K. P.	2018	Integrating phylogenomic and population genomic patterns in avian lice provides a more complete picture of parasite evolution
T. A. Catanach, Valim, M. Paiva, Weckstein, J. D., Johnson, K. P.	2018	Cophylogenetic analysis of lice in the Colpocephalum complex (Phthiraptera: Amblycera)
K. P. Johnson, Nguyen, N. -phuong, Sweet, A. D., Boyd, B. M., Warnow, T., Allen, J. M.	2018	Simultaneous radiation of bird and mammal lice following the K-Pg boundary
A. D. Sweet, Bush, S. E., Gustafsson, D. R., Allen, J. M., DiBlasi, E., Skeen, H. R., Weckstein, J. D., Johnson, K. P.	2018	Host and parasite morphology influence congruence between host and parasite phylogenies
J. Soto-Patiño, Londoño, G. A., Johnson, K. P., Weckstein, J. D., Avendaño, J. Enrique, Catanach, T. A., Sweet, A. D., Cook, A. T., Jamkowski, J. E., Allen, J. M.	2018	Composition and distribution of lice (Insecta: Phthiraptera) on Colombian and Peruvian birds: New data on louse-host association in the Neotropics
E. DiBlasi, Johnson, K. P., Stringham, S. A., Hansen, A. N., Beach, A. B., Clayton, D. H., Bush, S. E.	2018	Phoretic dispersal influences parasite population genetic structure
J. E. Light, Harper, S. E., Johnson, K. P., Demastes, J. W., Spradling, T. A.	2018	Development and Characterization of 12 Novel Polymorphic Microsatellite Loci for the Mammal Chewing Louse Geomydoecus aurei (Insecta: Phthiraptera) and a Comparison of Next-Generation Sequencing Approaches for Use in Parasitology
K. P. Johnson, Dietrich, C. H., Friedrich, F., Beutel, R. G., Wipfler, B., Peters, R. S., Allen, J. M., Petersen, M., Donath, A., Walden, K. K. O., Kozlov, A. M., Podsiadlowski, L., Mayer, C., Meusemann, K., Vasilikopoulos, A., Waterhouse, R. M., Cameron, S. L., Weirauch, C., Swanson, D. R., Percy, D. M., Hardy, N. B., Terry, I., Liu, S., Zhou, X., Misof, B., Robertson, H. M., Yoshizawa, K.	2018	Phylogenomics and the evolution of hemipteroid insects
A. D. Sweet, Johnson K. P.	2018	The role of parasite dispersal in shaping a host-parasite system at multiple evolutionary scales
J. Doña, Proctor, H. C., Serrano, D., Johnson, K. P., van Oploo, A. Oddy‐, Huguet‐Tapia, J. C., Ascunce, M. S., Jovani, R.	2018	Feather mites play a role in cleaning host feathers: New insights from DNA metabarcoding and microscopy
J. M. Allen, LaFrance, R., Folk, R. A., Johnson, K. P., Guralnick, R. P.	2018	aTRAM 2.0: An Improved, Flexible Locus Assembler for NGS Data
T. A. Catanach, Johnson, K. P., Marks, B. D., Moyle, R. G., Valim, M. Paiva, Weckstein, J. D.	2019	Two lineages of kingfisher feather lice exhibit differing degrees of cospeciation with their hosts
S. M. Villa, Altuna, J. C., Ruff, J. S., Beach, A. B., Mulvey, L. I., Poole, E. J., Campbell, H. E., Johnson, K. P., Shapiro, M. D., Bush, S. E., Clayton, D. H.	2019	Rapid experimental evolution of reproductive isolation from a single natural population

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